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BMCBI
2008
132views more  BMCBI 2008»
14 years 9 months ago
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...
FUIN
2008
136views more  FUIN 2008»
14 years 9 months ago
Multi-Dimensional Relational Sequence Mining
The issue addressed in this paper concerns the discovery of frequent multi-dimensional patterns from relational sequences. The great variety of applications of sequential pattern m...
Floriana Esposito, Nicola Di Mauro, Teresa Maria A...
BMCBI
2006
88views more  BMCBI 2006»
14 years 9 months ago
Protein kinases associated with the yeast phosphoproteome
Background: Protein phosphorylation is an extremely important mechanism of cellular regulation. A large-scale study of phosphoproteins in a whole-cell lysate of Saccharomyces cere...
Ross I. Brinkworth, Alan L. Munn, Bostjan Kobe
BMCBI
2006
95views more  BMCBI 2006»
14 years 9 months ago
A quantitative analysis of secondary RNA structure using domination based parameters on trees
Background: It has become increasingly apparent that a comprehensive database of RNA motifs is essential in order to achieve new goals in genomic and proteomic research. Secondary...
Teresa W. Haynes, Debra J. Knisley, Edith Seier, Y...
BMCBI
2006
174views more  BMCBI 2006»
14 years 9 months ago
CARAT: A novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays
Background: DNA copy number alterations are one of the main characteristics of the cancer cell karyotype and can contribute to the complex phenotype of these cells. These alterati...
Jing Huang, Wen Wei, Joyce Chen, Jane Zhang, Guoyi...