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GECCO
2008
Springer
154views Optimization» more  GECCO 2008»
14 years 11 months ago
Automated shape composition based on cell biology and distributed genetic programming
Motivated by the ability of living cells to form specific shapes and structures, we present a computational approach using distributed genetic programming to discover cell-cell i...
Linge Bai, Manolya Eyiyurekli, David E. Breen
TC
2010
14 years 8 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
BMCBI
2008
108views more  BMCBI 2008»
14 years 10 months ago
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance
Background: Motif finding algorithms have developed in their ability to use computationally efficient methods to detect patterns in biological sequences. However the posterior cla...
Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arl...
DAGSTUHL
2006
14 years 11 months ago
Modeling and Simulating Biological Processes with Stochastic Multiset Rewriting
ed Abstract Membrane systems are models of computation inspired by the structure and the function of biological cells. The model was introduced in 1998 by Gh. Paun and since then m...
Matteo Cavaliere, Sean Sedwards
IC3
2009
14 years 7 months ago
IDChase: Mitigating Identifier Migration Trap in Biological Databases
A convenient mechanism to refer to large biological objects such as sequences, structures and networks is the use of identifiers or handles, commonly called IDs. IDs function as a ...
Anupam Bhattacharjee, Aminul Islam, Hasan M. Jamil...