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RECOMB
2007
Springer
15 years 10 months ago
Beyond Galled Trees - Decomposition and Computation of Galled Networks
Reticulate networks are a type of phylogenetic network that are used to represent reticulate evolution involving hybridization, horizontal gene transfer or recombination. The simpl...
Daniel H. Huson, Tobias H. Klöpper
ISMB
1998
14 years 11 months ago
A Surface Measure for Probabilistic Structural Computations
Computingthree-dimensional structures from sparse experimentalconstraints requires methodsfor combining heterogeneoussourcesof information,such as distances, angles, andmeasuresof...
Jeanette P. Schmidt, Cheng Che Chen, Jonathan L. C...
ISMB
1994
14 years 11 months ago
Evolution of a Computer Program for Classifying Protein Segments as Transmembrane Domains Using Genetic Programming
The recently-developedgenetic programming paradigmisused to evoIve a computer program to classify a given protein segment as being a transmembrane domainor non-uansmembranearea of...
John R. Koza
RECOMB
2008
Springer
15 years 10 months ago
Computation of Median Gene Clusters
Whole genome comparison based on gene order has become a popular approach in comparative genomics. An important task in this field is the detection of gene clusters, i.e. sets of g...
Sebastian Böcker, Katharina Jahn, Julia Mixta...
RECOMB
2008
Springer
15 years 10 months ago
On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios
In the past years, many combinatorial arguments have been made to support the theory that mammalian genome rearrangement scenarios rely heavily on breakpoint reuse. Different model...
Anne Bergeron, Julia Mixtacki, Jens Stoye