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RECOMB
2010
Springer
14 years 8 months ago
An Approximation Algorithm for Computing a Parsimonious First Speciation in the Gene Duplication Model
We consider the following problem: given a forest of gene family trees on a set of genomes, find a first speciation which splits these genomes into two subsets and minimizes the ...
Aïda Ouangraoua, Krister M. Swenson, Cedric C...
ESANN
2008
14 years 11 months ago
Neural networks for computational neuroscience
Computational neuroscience is an appealing interdisciplinary domain, at the interface between biology and computer science. It aims at understanding the experimental data obtained...
David Meunier, Hélène Paugam-Moisy
BMCBI
2006
145views more  BMCBI 2006»
14 years 10 months ago
Fast-Find: A novel computational approach to analyzing combinatorial motifs
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
HOTOS
1997
IEEE
15 years 2 months ago
Building Diverse Computer Systems
Diversity is an important source of robustness in biological systems. Computers, by contrast, are notable for their lack of diversity. Although homogeneous systems have many advan...
Stephanie Forrest, Anil Somayaji, David H. Ackley
CIBCB
2005
IEEE
15 years 3 months ago
Heuristic Algorithm for Computing Reversal Distance with MultiGene Families via Binary Integer Programming
— Hannenhalli and Pevzner developed the first polynomial-time algorithm for the combinatorial problem of sorting of signed genomic data. Their algorithm solves the minimum numbe...
Jakkarin Suksawatchon, Chidchanok Lursinsap, Mikae...