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BIRTHDAY
2010
Springer
14 years 7 months ago
Some Thoughts on the Semantics of Biocharts
Abstract. This paper combines three topics to which Amir Pnueli contributed significantly: the semantics of languages for concurrency, the semantics of statecharts, and reactive an...
David Harel, Hillel Kugler
CCCG
2009
14 years 11 months ago
Defining and computing accessibility radius
In structural molecular biology software, the accessibility of an atom in a molecule to a ball representing solvent is either computed slowly by building a solventaccessible surfa...
Vishal Verma, Jack Snoeyink
BIBE
2009
IEEE
252views Bioinformatics» more  BIBE 2009»
15 years 4 months ago
Multi-Agents System to Model Cell Signalling by Using Fuzzy Cognitive Maps. Application to Computer Simulation of Multiple Myelo
—In order to simulate biological processes, we use multi-agents system. However, modelling cell behavior in systems biology is complex and may be based on intracellular biochemic...
Vincent Rodin, Gabriel Querrec, Pascal Ballet, Fra...
ASM
2005
ASM
15 years 3 months ago
Scenario based Analysis of Linear Computations
Abstract. In this paper we consider the following task: given an abstract state machine, characterize the subsets of initial values corresponding to different typical scenarios of...
Vladimir Filatov, Rostislav Yavorskiy
WABI
2007
Springer
123views Bioinformatics» more  WABI 2007»
15 years 4 months ago
Inverse Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of parameter values for the alignment scoring function is critical. Small changes in gap penalties, for example, can yield radically ...
Eagu Kim, John D. Kececioglu