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RECOMB
2003
Springer
16 years 3 months ago
Approximation of protein structure for fast similarity measures
It is shown that structural similarity between proteins can be decided well with much less information than what is used in common similarity measures. The full C representation c...
Fabian Schwarzer, Itay Lotan
RECOMB
2009
Springer
15 years 10 months ago
Rearrangement Models and Single-Cut Operations
Abstract. There have been many widely used genome rearrangement models, such as reversals, HannenhalliPevzner, and double-cut and join. Though each one can be precisely defined, t...
Paul Medvedev, Jens Stoye
AB
2008
Springer
15 years 9 months ago
The Smallest Multistationary Mass-Preserving Chemical Reaction Network
Biochemical models that exhibit bistability are of interest to biologists and mathematicians alike. Chemical reaction network theory can provide sufficient conditions for the exist...
Anne Shiu
ASM
2008
ASM
15 years 5 months ago
Model Based Refinement and the Tools of Tomorrow
The ingredients of typical model based development via refinement are re-examined, and some well known frameworks are reviewed in that light, drawing out commonalities and differen...
Richard Banach
ASM
2008
ASM
15 years 5 months ago
Formal Modeling and Analysis of a Flash Filesystem in Alloy
This paper describes the formal modeling and analysis of a design for a flash-based filesystem in Alloy. We model the basic operations of a filesystem as well as features that are ...
Eunsuk Kang, Daniel Jackson