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ECCB
2003
IEEE
15 years 11 months ago
Gene networks inference using dynamic Bayesian networks
This article deals with the identification of gene regulatory networks from experimental data using a statistical machine learning approach. A stochastic model of gene interactio...
Bruno-Edouard Perrin, Liva Ralaivola, Aurél...
AI
2003
Springer
15 years 11 months ago
An Improved Ant Colony Optimisation Algorithm for the 2D HP Protein Folding Problem
The prediction of a protein’s structure from its amino-acid sequence is one of the most important problems in computational biology. In the current focus on a widely studied abst...
Alena Shmygelska, Holger H. Hoos
ASM
2003
ASM
15 years 11 months ago
An ASM Semantics of UML Derived from the Meta-model and Incorporating Actions
We present an approach towards a formal dynamic semantics for UML using ASM. We aim to remain as close as possible to the standard definition of UML and to cover the operational pa...
Ileana Ober
ARC
2007
Springer
102views Hardware» more  ARC 2007»
15 years 10 months ago
Reconfigurable Hardware Acceleration of Canonical Graph Labelling
Many important algorithms in computational biology and related subjects rely on the ability to extract and to identify sub-graphs of larger graphs; an example is to find common fun...
David B. Thomas, Wayne Luk, Michael Stumpf
ICALP
2007
Springer
15 years 10 months ago
In-Place Suffix Sorting
Given string T = T[1, . . . , n], the suffix sorting problem is to lexicographically sort the suffixes T[i, . . . , n] for all i. This problem is central to the construction of suf...
Gianni Franceschini, S. Muthukrishnan