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2004
Tsinghua U.
15 years 3 months ago
Applications of storage mapping optimization to register promotion
Storage mapping optimization is a flexible approach to folding array dimensions in numerical codes. It is designed to reduce the memory footprint after a wide spectrum of loop tr...
Patrick Carribault, Albert Cohen
CSR
2006
Springer
15 years 1 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
IWPEC
2010
Springer
14 years 7 months ago
On the Kernelization Complexity of Colorful Motifs
The Colorful Motif problem asks if, given a vertex-colored graph G, there exists a subset S of vertices of G such that the graph induced by G on S is connected and contains every c...
Abhimanyu M. Ambalath, Radheshyam Balasundaram, Ch...
BMCBI
2011
14 years 4 months ago
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and proposi
Background: Remote homology detection is a hard computational problem. Most approaches have trained computational models by using either full protein sequences or multiple sequenc...
Juliana S. Bernardes, Alessandra Carbone, Gerson Z...
NAR
2010
148views more  NAR 2010»
14 years 4 months ago
SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
The prediction of protein function as well as the reconstruction of evolutionary genesis employing sequence comparison at large is still the most powerful tool in sequence analysi...
Thomas Rattei, Patrick Tischler, Stefan Götz,...