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RECOMB
2005
Springer
15 years 10 months ago
The Factor Graph Network Model for Biological Systems
Abstract. We introduce an extended computational framework for studying biological systems. Our approach combines formalization of existing qualitative models that are in wide but ...
Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...
NAR
2006
98views more  NAR 2006»
14 years 10 months ago
oGNM: online computation of structural dynamics using the Gaussian Network Model
An assessment of the equilibrium dynamics of biomolecular systems, and in particular their most cooperativefluctuationsaccessibleundernativestate conditions, is a first step towar...
Lee-Wei Yang, A. J. Rader, Xiong Liu, Christopher ...
BMCBI
2006
118views more  BMCBI 2006»
14 years 10 months ago
Exploration of biological network centralities with CentiBiN
Background: The elucidation of whole-cell regulatory, metabolic, interaction and other biological networks generates the need for a meaningful ranking of network elements. Central...
Björn H. Junker, Dirk Koschützki, Falk S...
FOCI
2007
IEEE
15 years 4 months ago
The Immune System in Pieces: Computational Lessons from Degeneracy in the Immune System
— The concept of degeneracy in biology, including the immune system, is well accepted and has been demonstrated to be present at many different levels. We explore this concept fr...
Miguel Mendao, Jonathan Timmis, Paul S. Andrews, M...
IEEECGIV
2006
IEEE
15 years 4 months ago
PathBank: Web-Based Querying and Visualziation of an Integrated Biological Pathway Database
PathBank is a web-based query and visualization system for biological pathways using an integrated pathway database. To address the needs for biologists to visualize and analyze b...
Joshua Wing Kei Ho, Tristan Manwaring, Seok-Hee Ho...