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» Biological Network Inference Using Redundancy Analysis
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RECOMB
2006
Springer
15 years 10 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
RECOMB
2003
Springer
15 years 10 months ago
Approximation of protein structure for fast similarity measures
It is shown that structural similarity between proteins can be decided well with much less information than what is used in common similarity measures. The full C representation c...
Fabian Schwarzer, Itay Lotan
90
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WCET
2008
14 years 11 months ago
INFER: Interactive Timing Profiles based on Bayesian Networks
We propose an approach for timing analysis of software-based embedded computer systems that builds on the established probabilistic framework of Bayesian networks. We envision an ...
Michael Zolda
FM
2009
Springer
138views Formal Methods» more  FM 2009»
15 years 4 months ago
What Can Formal Methods Bring to Systems Biology?
This position paper argues that the operational modelling approaches from the formal methods community can be applied fruitfully within the systems biology domain. The results can ...
Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, E...
BIOINFORMATICS
2006
118views more  BIOINFORMATICS 2006»
14 years 9 months ago
A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription
Motivation Quantitative estimation of the regulatory relationship between transcription factors and genes is a fundamental stepping stone when trying to develop models of cellular...
Guido Sanguinetti, Magnus Rattray, Neil D. Lawrenc...