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» Biological Network Inference Using Redundancy Analysis
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CIKM
1997
Springer
15 years 1 months ago
An Analysis of Cardinality Constraints in Redundant Relationships
In this paper, we present a complete analysis of redundant relationships in the entity-relationship model. Existing approaches use the concept of functional dependencies for ident...
James Dullea, Il-Yeol Song
ISMB
1998
14 years 11 months ago
Phylogenetic Inference in Protein Superfamilies: Analysis of SH2 Domains
This workfocuses on the inference of evolutionary relationships in protein superfamilies, and the uses of these relationships to identify keypositions in the structure, to infer a...
Kimmen Sjölander
88
Voted
GECCO
2006
Springer
202views Optimization» more  GECCO 2006»
15 years 1 months ago
Inference of genetic networks using S-system: information criteria for model selection
In this paper we present an evolutionary approach for inferring the structure and dynamics in gene circuits from observed expression kinetics. For representing the regulatory inte...
Nasimul Noman, Hitoshi Iba
84
Voted
GECCO
2005
Springer
180views Optimization» more  GECCO 2005»
15 years 3 months ago
Inference of gene regulatory networks using s-system and differential evolution
In this work we present an improved evolutionary method for inferring S-system model of genetic networks from the time series data of gene expression. We employed Differential Ev...
Nasimul Noman, Hitoshi Iba
EMO
2005
Springer
108views Optimization» more  EMO 2005»
15 years 3 months ago
Multi-objective Model Optimization for Inferring Gene Regulatory Networks
With the invention of microarray technology, researchers are able to measure the expression levels of ten thousands of genes in parallel at various time points of a biological proc...
Christian Spieth, Felix Streichert, Nora Speer, An...