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» Biomedical Case Studies in Data Intensive Computing
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USENIX
2000
15 years 1 months ago
Towards Availability Benchmarks: A Case Study of Software RAID Systems
Benchmarks have historically played a key role in guiding the progress of computer science systems research and development, but have traditionally neglected the areas of availabi...
Aaron B. Brown, David A. Patterson
116
Voted
BMCBI
2007
119views more  BMCBI 2007»
15 years 20 days ago
Conceptual-level workflow modeling of scientific experiments using NMR as a case study
Background: Scientific workflows improve the process of scientific experiments by making computations explicit, underscoring data flow, and emphasizing the participation of humans...
Kacy K. Verdi, Heidi J. C. Ellis, Michael R. Gryk
116
Voted
CLUSTER
2003
IEEE
15 years 5 months ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson
91
Voted
SC
2003
ACM
15 years 5 months ago
Optimizing 10-Gigabit Ethernet for Networks of Workstations, Clusters, and Grids: A Case Study
This paper presents a case study of the 10-Gigabit Ethernet (10GbE) adapter from Intel R . Specifically, with appropriate optimizations to the configurations of the 10GbE adapte...
Wu-chun Feng, Justin Gus Hurwitz, Harvey B. Newman...
BMCBI
2006
171views more  BMCBI 2006»
15 years 18 days ago
The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies
Background: Intensity values measured by Affymetrix microarrays have to be both normalized, to be able to compare different microarrays by removing non-biological variation, and s...
Roel G. W. Verhaak, Frank J. T. Staal, Peter J. M....