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BMCBI
2008
134views more  BMCBI 2008»
14 years 12 months ago
Identification of transcription factor contexts in literature using machine learning approaches
Background: Availability of information about transcription factors (TFs) is crucial for genome biology, as TFs play a central role in the regulation of gene expression. While man...
Hui Yang, Goran Nenadic, John A. Keane
BMCBI
2007
209views more  BMCBI 2007»
14 years 11 months ago
SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics
Background: The SYMBIOmatics Specific Support Action (SSA) is "an information gathering and dissemination activity" that seeks "to identify synergies between the bi...
Dietrich Rebholz-Schuhmann, Graham Cameron, Domini...
BMCBI
2010
144views more  BMCBI 2010»
14 years 12 months ago
Identifying overrepresented concepts in gene lists from literature: a statistical approach based on Poisson mixture model
Background: Large-scale genomic studies often identify large gene lists, for example, the genes sharing the same expression patterns. The interpretation of these gene lists is gen...
Xin He, Moushumi Sen Sarma, Xu Ling, Brant W. Chee...
BMCBI
2006
127views more  BMCBI 2006»
14 years 12 months ago
Exploring supervised and unsupervised methods to detect topics in biomedical text
Background: Topic detection is a task that automatically identifies topics (e.g., "biochemistry" and "protein structure") in scientific articles based on infor...
Minsuk Lee, Weiqing Wang, Hong Yu
BIOCOMP
2006
15 years 1 months ago
A Relational Genomics Search Engine
We report on the development of a relational genomic search engine that integrates search of structured biological data and biomedical literature. After identifying an optimal prep...
Jay Urbain, Nazli Goharian