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AOSD
2010
ACM
15 years 5 months ago
Tracking code patterns over multiple software versions with Herodotos
An important element of understanding a software code base is to identify the repetitive patterns of code it contains and how these evolve over time. Some patterns are useful to t...
Nicolas Palix, Julia L. Lawall, Gilles Muller
BMCBI
2008
123views more  BMCBI 2008»
14 years 11 months ago
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
Claudia Chica, Alberto Labarga, Cathryn M. Gould, ...
ICCAD
1998
IEEE
65views Hardware» more  ICCAD 1998»
15 years 3 months ago
Multiway partitioning with pairwise movement
It is known to many researchers in the partitioning community that the recursive bipartitioning approach outperforms the direct non-recursive approach in solving the multiway part...
Jason Cong, Sung Kyu Lim
BMCBI
2006
95views more  BMCBI 2006»
14 years 11 months ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
EAAI
2006
189views more  EAAI 2006»
14 years 11 months ago
Evolutionary algorithms for VLSI multi-objective netlist partitioning
The problem of partitioning appears in several areas ranging from VLSI, parallel programming, to molecular biology. The interest in finding an optimal partition especially in VLSI ...
Sadiq M. Sait, Aiman H. El-Maleh, Raslan H. Al-Aba...