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RECOMB
2010
Springer
15 years 4 months ago
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings
Abstract. We consider the problem of aligning two metabolic pathways. Unlike traditional approaches, we do not restrict the alignment to one-to-one mappings between the molecules o...
Ferhat Ay, Tamer Kahveci
NIPS
2007
15 years 1 months ago
Fixing Max-Product: Convergent Message Passing Algorithms for MAP LP-Relaxations
We present a novel message passing algorithm for approximating the MAP problem in graphical models. The algorithm is similar in structure to max-product but unlike max-product it ...
Amir Globerson, Tommi Jaakkola
SIAMCOMP
2000
118views more  SIAMCOMP 2000»
14 years 11 months ago
Constructive, Deterministic Implementation of Shared Memory on Meshes
This paper describes a scheme to implement a shared address space of size m on an n-node mesh, with m polynomial in n, where each mesh node hosts a processor and a memory module. A...
Andrea Pietracaprina, Geppino Pucci, Jop F. Sibeyn
CORR
2010
Springer
141views Education» more  CORR 2010»
14 years 10 months ago
Popularity at Minimum Cost
We consider an extension of the popular matching problem in this paper. The input to the popular matching problem is a bipartite graph G = (A ∪ B, E), where A is a set of people,...
Telikepalli Kavitha, Meghana Nasre, Prajakta Nimbh...
SODA
2012
ACM
170views Algorithms» more  SODA 2012»
13 years 2 months ago
Compression via matroids: a randomized polynomial kernel for odd cycle transversal
The Odd Cycle Transversal problem (OCT) asks whether a given graph can be made bipartite by deleting at most k of its vertices. In a breakthrough result Reed, Smith, and Vetta (Op...
Stefan Kratsch, Magnus Wahlström