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136
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IPM
2007
137views more  IPM 2007»
15 years 3 months ago
Analyzing imbalance among homogeneous index servers in a web search system
The performance of parallel query processing in a cluster of index servers is crucial for modern web search systems. In such a scenario, the response time basically depends on the...
Claudine Santos Badue, Ricardo A. Baeza-Yates, Ber...
155
Voted
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 10 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
146
Voted
BMCBI
2006
137views more  BMCBI 2006»
15 years 3 months ago
Bounded search for de novo identification of degenerate cis-regulatory elements
Background: The identification of statistically overrepresented sequences in the upstream regions of coregulated genes should theoretically permit the identification of potential ...
Jonathan M. Carlson, Arijit Chakravarty, Radhika S...
159
Voted
BMCBI
2005
152views more  BMCBI 2005»
15 years 3 months ago
CoPub Mapper: mining MEDLINE based on search term co-publication
Background: High throughput microarray analyses result in many differentially expressed genes that are potentially responsible for the biological process of interest. In order to ...
Blaise T. F. Alako, Antoine Veldhoven, Sjozef van ...
131
Voted
PODS
2008
ACM
211views Database» more  PODS 2008»
16 years 3 months ago
The power of two min-hashes for similarity search among hierarchical data objects
In this study we propose sketching algorithms for computing similarities between hierarchical data. Specifically, we look at data objects that are represented using leaf-labeled t...
Sreenivas Gollapudi, Rina Panigrahy