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ATAL
2006
Springer
15 years 7 months ago
Multiply-constrained distributed constraint optimization
Distributed constraint optimization (DCOP) has emerged as a useful technique for multiagent coordination. While previous DCOP work focuses on optimizing a single team objective, i...
Emma Bowring, Milind Tambe, Makoto Yokoo
169
Voted
RECOMB
2004
Springer
16 years 3 months ago
Comparing in situ mRNA expression patterns of drosophila embryos
In situ staining of a target mRNA at several time points during the development of a D. melanogaster embryo gives one a detailed spatio-temporal view of the expression pattern of ...
Hanchuan Peng, Eugene W. Myers
115
Voted
GECCO
2004
Springer
127views Optimization» more  GECCO 2004»
15 years 9 months ago
Computational Complexity and Simulation of Rare Events of Ising Spin Glasses
We discuss the computational complexity of random 2D Ising spin glasses, which represent an interesting class of constraint satisfaction problems for black box optimization. Two ex...
Martin Pelikan, Jiri Ocenasek, Simon Trebst, Matth...
BMCBI
2007
233views more  BMCBI 2007»
15 years 3 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
BMCBI
2006
178views more  BMCBI 2006»
15 years 3 months ago
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool
Background: The Gene Ontology has become an extremely useful tool for the analysis of genomic data and structuring of biological knowledge. Several excellent software tools for na...
Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Hut...