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    » BranchClust: a phylogenetic algorithm for selecting gene fam...
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    BMCBI
    2005
    97views more  BMCBI 2005»
    Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data
    13 years 6 months ago
    Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data
    Download  www.biomedcentral.com
    Background: As genomes evolve after speciation, gene content, coding sequence, gene expression, and splicing all diverge with time from ancestors with close relatives. A minimum e...
    Roald Rossnes, Ingvar Eidhammer, David A. Liberles
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    WABI
    2004
    Springer
    87views Bioinformatics» more  WABI 2004»
    Reconstructing Ancestral Gene Orders Using Conserved Intervals
    13 years 11 months ago
    Reconstructing Ancestral Gene Orders Using Conserved Intervals
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    Conserved intervals were recently introduced as a measure of similarity between genomes whose genes have been shuffled during evolution by genomic rearrangements. Phylogenetic reco...
    Anne Bergeron, Mathieu Blanchette, Annie Chateau, ...
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    ISMB
    2007
    122views Computational Biology» more  ISMB 2007»
    Gene selection via the BAHSIC family of algorithms
    13 years 8 months ago
    Gene selection via the BAHSIC family of algorithms
    Download  webdav.tuebingen.mpg.de
    Le Song, Justin Bedo, Karsten M. Borgwardt, Arthur...
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    BMCBI
    2008
    130views more  BMCBI 2008»
    A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
    13 years 6 months ago
    A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
    Download  www.biomedcentral.com
    Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
    Sheila Podell, Terry Gaasterland, Eric E. Allen
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    NAR
    2000
    120views more  NAR 2000»
    WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction
    13 years 6 months ago
    WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction
    Download  cmbi.bjmu.edu.cn
    The WIT (What Is There) (http://wit.mcs.anl.gov/WIT2/ ) system has been designed to support comparative analysis of sequenced genomes and to generate metabolic reconstructions bas...
    Ross A. Overbeek, Niels Larsen, Gordon D. Pusch, M...
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