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» Building Genetic Networks for Gene Expression Patterns
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JUCS
2010
150views more  JUCS 2010»
14 years 8 months ago
SOM Clustering to Promote Interoperability of Directory Metadata: A Grid-Enabled Genetic Algorithm Approach
: Directories provide a general mechanism for describing resources and enabling information sharing within and across organizations. Directories must resolve differing structures a...
Lei Li, Vijay K. Vaishnavi, Art Vandenberg
JBI
2006
107views Bioinformatics» more  JBI 2006»
14 years 9 months ago
Knowledge guided analysis of microarray data
To microarray expression data analysis, it is well accepted that biological knowledge-guided clustering techniques show more advantages than pure mathematical techniques. In this ...
Zhuo Fang, Jiong Yang, Yixue Li, Qing-ming Luo, Le...
BMCBI
2007
168views more  BMCBI 2007»
14 years 9 months ago
Bayesian model-based inference of transcription factor activity
Background: In many approaches to the inference and modeling of regulatory interactions using microarray data, the expression of the gene coding for the transcription factor is co...
Simon Rogers, Raya Khanin, Mark Girolami
ICS
2010
Tsinghua U.
15 years 2 months ago
Small-ruleset regular expression matching on GPGPUs: quantitative performance analysis and optimization
We explore the intersection between an emerging class of architectures and a prominent workload: GPGPUs (General-Purpose Graphics Processing Units) and regular expression matching...
Jamin Naghmouchi, Daniele Paolo Scarpazza, Mladen ...
BMCBI
2004
149views more  BMCBI 2004»
14 years 9 months ago
MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states
Background: Information obtained by DNA microarray technology gives a rough snapshot of the transcriptome state, i.e., the expression level of all the genes expressed in a cell po...
Gaëlle Lelandais, Philippe Marc, Pierre Vince...