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WABI
2001
Springer
142views Bioinformatics» more  WABI 2001»
15 years 7 months ago
Pattern Matching and Pattern Discovery Algorithms for Protein Topologies
We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgrap...
Juris Viksna, David Gilbert
CIBCB
2009
IEEE
15 years 4 months ago
rnaDesign: Local search for RNA secondary structure design
Abstract-- The RNA secondary structure design (SSD) problem is a recently emerging research topic motivated by applications such as customized drug design and the self-assembly of ...
Denny C. Dai, Herbert H. Tsang, Kay C. Wiese
CSB
2003
IEEE
176views Bioinformatics» more  CSB 2003»
15 years 8 months ago
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings
Recognition of a protein’s fold provides valuable information about its function. While many sequence-based homology prediction methods exist, an important challenge remains: tw...
Christopher James Langmead, Bruce Randall Donald
BMCBI
2005
126views more  BMCBI 2005»
15 years 2 months ago
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA
Background: The multitude of motif detection algorithms developed to date have largely focused on the detection of patterns in primary sequence. Since sequence-dependent DNA struc...
Robert G. Beiko, Robert L. Charlebois
SIGMOD
2009
ACM
219views Database» more  SIGMOD 2009»
16 years 3 months ago
Hermes: a travel through semantics on the data web
The Web as a global information space is developing from a Web of documents to a Web of data. This development opens new ways for addressing complex information needs. Search is n...
Haofen Wang, Thomas Penin, Kaifeng Xu, Junquan Che...