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BMCBI
2010
139views more  BMCBI 2010»
14 years 11 months ago
CMASA: an accurate algorithm for detecting local protein structural similarity and its application to enzyme catalytic site anno
Background: The rapid development of structural genomics has resulted in many "unknown function" proteins being deposited in Protein Data Bank (PDB), thus, the functiona...
Gong-Hua Li, Jing-Fei Huang
SODA
2004
ACM
102views Algorithms» more  SODA 2004»
15 years 14 days ago
The hyperring: a low-congestion deterministic data structure for distributed environments
In this paper we study the problem of designing concurrent searchable data structures with performance guarantees that can be used in a distributed environment where data elements...
Baruch Awerbuch, Christian Scheideler
ISMVL
2000
IEEE
120views Hardware» more  ISMVL 2000»
15 years 3 months ago
Mod-p Decision Diagrams: A Data Structure for Multiple-Valued Functions
Multiple-valued decision diagrams (MDDs) give a way of approaching problems by using symbolic variables which are often more naturally associated with the problem statement than t...
Harald Sack, Elena Dubrova, Christoph Meinel
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BMCBI
2008
93views more  BMCBI 2008»
14 years 11 months ago
Hybrid MM/SVM structural sensors for stochastic sequential data
In this paper we present preliminary results stemming from a novel application of Markov Models and Support Vector Machines to splice site classification of Intron-Exon and Exon-I...
Brian Roux, Stephen Winters-Hilt
PAKDD
2011
ACM
253views Data Mining» more  PAKDD 2011»
14 years 1 months ago
Balance Support Vector Machines Locally Using the Structural Similarity Kernel
A structural similarity kernel is presented in this paper for SVM learning, especially for learning with imbalanced datasets. Kernels in SVM are usually pairwise, comparing the sim...
Jianxin Wu