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STACS
2010
Springer
15 years 8 months ago
Beyond Bidimensionality: Parameterized Subexponential Algorithms on Directed Graphs
In 2000 Alber et al. [SWAT 2000 ] obtained the first parameterized subexponential algorithm on undirected planar graphs by showing that k-DOMINATING SET is solvable in time 2O( ...
Frederic Dorn, Fedor V. Fomin, Daniel Lokshtanov, ...
BMCBI
2010
167views more  BMCBI 2010»
15 years 1 months ago
Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
Background: Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription fa...
Denitsa Alamanova, Philip Stegmaier, Alexander E. ...
SODA
2012
ACM
212views Algorithms» more  SODA 2012»
13 years 4 months ago
Parallelism and time in hierarchical self-assembly
We study the role that parallelism plays in time complexariants of Winfree’s abstract Tile Assembly Model (aTAM), a model of molecular algorithmic self-assembly. In the “hiera...
Ho-Lin Chen, David Doty
CORR
2004
Springer
180views Education» more  CORR 2004»
15 years 1 months ago
Self-Organized Stigmergic Document Maps: Environment as a Mechanism for Context Learning
Social insect societies and more specifically ant colonies, are distributed systems that, in spite of the simplicity of their individuals, present a highly structured social organi...
Vitorino Ramos, Juan J. Merelo Guervós
BMCBI
2010
138views more  BMCBI 2010»
15 years 1 months ago
A database and API for variation, dense genotyping and resequencing data
Background: Advances in sequencing and genotyping technologies are leading to the widespread availability of multi-species variation data, dense genotype data and large-scale rese...
Daniel Rios, William M. McLaren, Yuan Chen, Ewan B...
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