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» Case Study: Visualizing Sets of Evolutionary Trees
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CSB
2005
IEEE
141views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Reconstructing Phylogenetic Networks Using Maximum Parsimony
Phylogenies—the evolutionary histories of groups of organisms—are one of the most widely used tools throughout the life sciences, as well as objects of research within systema...
Luay Nakhleh, Guohua Jin, Fengmei Zhao, John M. Me...
ESA
2008
Springer
106views Algorithms» more  ESA 2008»
14 years 11 months ago
An Experimental Analysis of Robinson-Foulds Distance Matrix Algorithms
In this paper, we study two fast algorithms--HashRF and PGM-Hashed--for computing the Robinson-Foulds (RF) distance matrix between a collection of evolutionary trees. The RF distan...
Seung-Jin Sul, Tiffani L. Williams
APCHI
2004
IEEE
15 years 1 months ago
Evolutionary Approaches to Visualisation and Knowledge Discovery
Haiku is a data mining system which combines the best properties of human and machine discovery. An self organising visualisation system is coupled with a genetic algorithm to prov...
Russell Beale, Andy Pryke, Robert J. Hendley
BMCBI
2007
144views more  BMCBI 2007»
14 years 9 months ago
Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study an
Background: Efforts to predict functional sites from globular proteins is increasingly common; however, the most successful of these methods generally require structural insight. ...
Dennis R. Livesay, Patrick D. Kidd, Sepehr Eskanda...
METRICS
2005
IEEE
15 years 3 months ago
Visualizing Historical Data Using Spectrographs
Studying the evolution of long lived processes such as the development history of a software system or the publication history of a research community, requires the analysis of a ...
Ahmed E. Hassan, Jingwei Wu, Richard C. Holt