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» Case Study: Visualizing Sets of Evolutionary Trees
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BMCBI
2006
129views more  BMCBI 2006»
14 years 11 months ago
Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
Background: Protein sequence alignment is one of the basic tools in bioinformatics. Correct alignments are required for a range of tasks including the derivation of phylogenetic t...
Tomas Ohlson, Varun Aggarwal, Arne Elofsson, Rober...
CIBCB
2007
IEEE
15 years 29 days ago
Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms
—In metabolic engineering it is difficult to identify which set of genetic manipulations will result in a microbial strain that achieves a desired production goal, due to the co...
Miguel Rocha, José P. Pinto, Isabel Rocha, ...
IFIP
2001
Springer
15 years 3 months ago
An Evolutionary Approach for Pareto-optimal Configurations in SOC Platforms
: One of the most important problems in SOC platforms design is that of defining strategies for tuning the parameters of a parameterized system so as to obtain the Pareto-optimal s...
Giuseppe Ascia, Vincenzo Catania, Maurizio Palesi
BMCBI
2010
110views more  BMCBI 2010»
14 years 11 months ago
Discovering local patterns of co - evolution: computational aspects and biological examples
Background: Co-evolution is the process in which two (or more) sets of orthologs exhibit a similar or correlative pattern of evolution. Co-evolution is a powerful way to learn abo...
Tamir Tuller, Yifat Felder, Martin Kupiec
GECCO
2005
Springer
150views Optimization» more  GECCO 2005»
15 years 4 months ago
A GA for maximum likelihood phylogenetic inference using neighbour-joining as a genotype to phenotype mapping
Evolutionary relationships among species can be represented by a phylogenetic tree and inferred by optimising some measure of fitness, such as the statistical likelihood of the t...
Leon Poladian