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» Case Study of a Functional Genomics Application
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ECBS
2005
IEEE
110views Hardware» more  ECBS 2005»
15 years 6 months ago
Synthesis of C++ Software from Verifiable CSPm Specifications
CSP++ is an object-oriented application framework for execution of CSP specifications that have been automatically synthesized into C++ source code by the cspt translator. We desc...
Stephen Doxsee, William B. Gardner
119
Voted
BMCBI
2010
164views more  BMCBI 2010»
15 years 20 days ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
102
Voted
BMCBI
2006
169views more  BMCBI 2006»
15 years 18 days ago
Comparative analysis of haplotype association mapping algorithms
Background: Finding the genetic causes of quantitative traits is a complex and difficult task. Classical methods for mapping quantitative trail loci (QTL) in miceuse an F2 cross b...
Phillip McClurg, Mathew T. Pletcher, Tim Wiltshire...
132
Voted
IPPS
2006
IEEE
15 years 6 months ago
Exploiting processing locality through paging configurations in multitasked reconfigurable systems
FPGA chips in reconfigurable computer systems are used as malleable coprocessors where components of a hardware library of functions can be configured as needed. As the number of ...
T. Taher, Tarek A. El-Ghazawi
98
Voted
BMCBI
2008
139views more  BMCBI 2008»
15 years 20 days ago
Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repea
Background: Identification of approximate tandem repeats is an important task of broad significance and still remains a challenging problem of computational genomics. Often there ...
Vladimir Paar, Nenad Pavin, Ivan Basar, Marija Ros...