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» Characterization of phylogenetic networks with NetTest
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42
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BMCBI
2010
79views more  BMCBI 2010»
15 years 19 days ago
Characterization of phylogenetic networks with NetTest
Miguel Arenas, Mateus Patricio, David Posada, Gabr...
73
Voted
CSB
2005
IEEE
126views Bioinformatics» more  CSB 2005»
15 years 6 months ago
Visualization of Logic Analysis of Phylogenetic Profiles (LAPP)
Recently Bowers et al. [1] analyzed triplet logic relationships among 4873 Clusters of Orthologous Groups (COGS) from 67 fully sequenced organisms by calculating how well logic re...
Kay A. Robbins, Li Zhao
108
Voted
BMCBI
2006
166views more  BMCBI 2006»
15 years 17 days ago
Extraction of phylogenetic network modules from the metabolic network
Background: In bio-systems, genes, proteins and compounds are related to each other, thus forming complex networks. Although each organism has its individual network, some organis...
Takuji Yamada, Minoru Kanehisa, Susumu Goto
141
Voted
BMCBI
2005
198views more  BMCBI 2005»
15 years 13 days ago
Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural
Background: The sequencing of the human genome has enabled us to access a comprehensive list of genes (both experimental and predicted) for further analysis. While a majority of t...
Qicheng Ma, Gung-Wei Chirn, Richard Cai, Joseph D....
BMCBI
2006
104views more  BMCBI 2006»
15 years 17 days ago
MANET: tracing evolution of protein architecture in metabolic networks
Background: Cellular metabolism can be characterized by networks of enzymatic reactions and transport processes capable of supporting cellular life. Our aim is to find evolutionar...
Hee Shin Kim, Jay E. Mittenthal, Gustavo Caetano-A...