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BMCBI
2006
92views more  BMCBI 2006»
14 years 12 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
BMCBI
2006
91views more  BMCBI 2006»
14 years 12 months ago
In silico identification of putative promoter motifs of White Spot Syndrome Virus
Background: White Spot Syndrome Virus, a member of the virus family Nimaviridae, is a large dsDNA virus infecting shrimp and other crustacean species. Although limited information...
Hendrik Marks, Xin-Ying Ren, Hans Sandbrink, Mari&...
DSS
2006
138views more  DSS 2006»
14 years 12 months ago
Design of a shopbot and recommender system for bundle purchases
The increasing proliferation of online shopping and purchasing has naturally led to a growth in the popularity of comparisonshopping search engines, popularly known as "shopb...
Robert S. Garfinkel, Ram D. Gopal, Arvind K. Tripa...
BMCBI
2007
148views more  BMCBI 2007»
14 years 12 months ago
Blast sampling for structural and functional analyses
Background: The post-genomic era is characterised by a torrent of biological information flooding the public databases. As a direct consequence, similarity searches starting with ...
Anne Friedrich, Raymond Ripp, Nicolas Garnier, Emm...
JCB
2006
123views more  JCB 2006»
14 years 11 months ago
Reconstructing Ancestral Haplotypes with a Dictionary Model
We propose a dictionary model for haplotypes. According to the model, a haplotype is constructed by randomly concatenating haplotype segments from a given dictionary of segments. ...
Kristin L. Ayers, Chiara Sabatti, Kenneth Lange