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BMCBI
2006
92views more  BMCBI 2006»
15 years 1 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
BMCBI
2006
91views more  BMCBI 2006»
15 years 1 months ago
In silico identification of putative promoter motifs of White Spot Syndrome Virus
Background: White Spot Syndrome Virus, a member of the virus family Nimaviridae, is a large dsDNA virus infecting shrimp and other crustacean species. Although limited information...
Hendrik Marks, Xin-Ying Ren, Hans Sandbrink, Mari&...
DSS
2006
138views more  DSS 2006»
15 years 1 months ago
Design of a shopbot and recommender system for bundle purchases
The increasing proliferation of online shopping and purchasing has naturally led to a growth in the popularity of comparisonshopping search engines, popularly known as "shopb...
Robert S. Garfinkel, Ram D. Gopal, Arvind K. Tripa...
BMCBI
2007
148views more  BMCBI 2007»
15 years 1 months ago
Blast sampling for structural and functional analyses
Background: The post-genomic era is characterised by a torrent of biological information flooding the public databases. As a direct consequence, similarity searches starting with ...
Anne Friedrich, Raymond Ripp, Nicolas Garnier, Emm...
JCB
2006
123views more  JCB 2006»
15 years 1 months ago
Reconstructing Ancestral Haplotypes with a Dictionary Model
We propose a dictionary model for haplotypes. According to the model, a haplotype is constructed by randomly concatenating haplotype segments from a given dictionary of segments. ...
Kristin L. Ayers, Chiara Sabatti, Kenneth Lange