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BMCBI
2008
103views more  BMCBI 2008»
14 years 9 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
PVLDB
2008
167views more  PVLDB 2008»
14 years 9 months ago
Managing and querying transaction-time databases under schema evolution
The old problem of managing the history of database information is now made more urgent and complex by fast spreading web information systems, such as Wikipedia. Our PRIMA system ...
Hyun Jin Moon, Carlo Curino, Alin Deutsch, Chien-Y...
PRL
2007
100views more  PRL 2007»
14 years 9 months ago
Visible models for interactive pattern recognition
The bottleneck in interactive visual classification is the exchange of information between human and machine. We introduce the concept of the visible model, which is an ion of an ...
Jie Zou, George Nagy
BMCBI
2008
141views more  BMCBI 2008»
14 years 9 months ago
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Background: Automated protein function prediction methods are needed to keep pace with high-throughput sequencing. With the existence of many programs and databases for inferring ...
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth...
GECCO
2009
Springer
131views Optimization» more  GECCO 2009»
14 years 7 months ago
A multi-objective approach to data sharing with privacy constraints and preference based objectives
Public data sharing is utilized in a number of businesses to facilitate the exchange of information. Privacy constraints are usually enforced to prevent unwanted inference of info...
Rinku Dewri, Darrell Whitley, Indrajit Ray, Indrak...