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BMCBI
2005
126views more  BMCBI 2005»
15 years 3 months ago
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA
Background: The multitude of motif detection algorithms developed to date have largely focused on the detection of patterns in primary sequence. Since sequence-dependent DNA struc...
Robert G. Beiko, Robert L. Charlebois
146
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BMCBI
2005
92views more  BMCBI 2005»
15 years 3 months ago
FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform
Background: Two of the main objectives of the genomic and post-genomic era are to structurally and functionally annotate genomes which consists of detecting genes' position a...
Philippe Gouret, Vérane Vitiello, Nathalie ...
AICOM
2004
118views more  AICOM 2004»
15 years 3 months ago
Qualitative pattern matching with linguistic terms
Abstract. In the framework of possibility theory, a tool named `fuzzy pattern matching' (FPM) has been proposed in the eighties and since successfully used in flexible queryin...
Yannick Loiseau, Henri Prade, Mohand Boughanem
134
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TVLSI
2008
139views more  TVLSI 2008»
15 years 3 months ago
Ternary CAM Power and Delay Model: Extensions and Uses
Applications in computer networks often require high throughput access to large data structures for lookup and classification. While advanced algorithms exist to speed these search...
Banit Agrawal, Timothy Sherwood
156
Voted
BMCBI
2004
208views more  BMCBI 2004»
15 years 3 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein