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» Classification of microarray data using gene networks
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110
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CEC
2008
IEEE
15 years 10 months ago
Evolving GeneChip correlation predictors on parallel graphics hardware
—A GPU is used to datamine five million correlations between probes within Affymetrix HG-U133A probesets across 6685 human tissue samples from NCBI’s GEO database. These conco...
William B. Langdon
126
Voted
BMCBI
2010
100views more  BMCBI 2010»
15 years 3 months ago
Trimming of mammalian transcriptional networks using network component analysis
Background: Network Component Analysis (NCA) has been used to deduce the activities of transcription factors (TFs) from gene expression data and the TF-gene binding relationship. ...
Linh M. Tran, Daniel R. Hyduke, James C. Liao
128
Voted
BMCBI
2008
120views more  BMCBI 2008»
15 years 3 months ago
A protein interaction based model for schizophrenia study
Background: Schizophrenia is a complex disease with multiple factors contributing to its pathogenesis. In addition to environmental factors, genetic factors may also increase susc...
Pei-Chun Hsu, Ueng-Cheng Yang, Kuan-Hui Shih, Chih...
134
Voted
GECCO
2005
Springer
180views Optimization» more  GECCO 2005»
15 years 9 months ago
Inference of gene regulatory networks using s-system and differential evolution
In this work we present an improved evolutionary method for inferring S-system model of genetic networks from the time series data of gene expression. We employed Differential Ev...
Nasimul Noman, Hitoshi Iba
145
Voted
BMCBI
2008
126views more  BMCBI 2008»
15 years 3 months ago
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
Katerina Kechris, Hao Li