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» Classification of microarray data using gene networks
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110
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BMCBI
2010
146views more  BMCBI 2010»
15 years 3 months ago
On the Choice and Number of Microarrays for Transcriptional Regulatory Network Inference
Background: Transcriptional regulatory network inference (TRNI) from large compendia of DNA microarrays has become a fundamental approach for discovering transcription factor (TF)...
Elissa J. Cosgrove, Timothy S. Gardner, Eric D. Ko...
114
Voted
ISMB
2000
15 years 5 months ago
A Pragmatic Information Extraction Strategy for Gathering Data on Genetic Interactions
We present in this paper a pragmatic strategy to perform information extraction from biologic texts. Since the emergence of the information extraction field, techniques have evolv...
Denys Proux, François Rechenmann, Laurent J...
133
Voted
JMLR
2008
117views more  JMLR 2008»
15 years 3 months ago
Closed Sets for Labeled Data
Closed sets have been proven successful in the context of compacted data representation for association rule learning. However, their use is mainly descriptive, dealing only with ...
Gemma C. Garriga, Petra Kralj, Nada Lavrac
142
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DILS
2004
Springer
15 years 9 months ago
On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology
Formal principles governing best practices in classification and definition have for too long been neglected in the construction of biomedical ontologies, in ways which have import...
Barry Smith, Jacob Köhler, Anand Kumar
151
Voted
BMCBI
2006
127views more  BMCBI 2006»
15 years 3 months ago
Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions
Background: DNA microarrays, which have been increasingly used to monitor mRNA transcripts at a global level, can provide detailed insight into cellular processes involved in resp...
Tao Han, Cathy D. Melvin, Leming M. Shi, William S...