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» Classification of microarray data using gene networks
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133
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BMCBI
2008
108views more  BMCBI 2008»
15 years 3 months ago
SPRINT: A new parallel framework for R
Background: Microarray analysis allows the simultaneous measurement of thousands to millions of genes or sequences across tens to thousands of different samples. The analysis of t...
Jon Hill, Matthew Hambley, Thorsten Forster, Murie...
155
Voted
BMCBI
2007
136views more  BMCBI 2007»
15 years 3 months ago
Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
Xiaoyu Chen, Mathieu Blanchette
144
Voted
BMCBI
2008
110views more  BMCBI 2008»
15 years 3 months ago
Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands
Background: Hypermethylation of promoter CpG islands is strongly correlated to transcriptional gene silencing and epigenetic maintenance of the silenced state. As well as its role...
Wei Dai, Jens M. Teodoridis, Janet Graham, Constan...
142
Voted
KDD
2008
ACM
259views Data Mining» more  KDD 2008»
16 years 3 months ago
Using ghost edges for classification in sparsely labeled networks
We address the problem of classification in partially labeled networks (a.k.a. within-network classification) where observed class labels are sparse. Techniques for statistical re...
Brian Gallagher, Hanghang Tong, Tina Eliassi-Rad, ...
141
Voted
BMCBI
2008
174views more  BMCBI 2008»
15 years 3 months ago
Evolutionary approaches for the reverse-engineering of gene regulatory networks: A study on a biologically realistic dataset
Background: Inferring gene regulatory networks from data requires the development of algorithms devoted to structure extraction. When only static data are available, gene interact...
Cédric Auliac, Vincent Frouin, Xavier Gidro...