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» Classification of microarray data using gene networks
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NAR
2011
188views Computer Vision» more  NAR 2011»
14 years 7 months ago
The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes
Various databases have harnessed the wealth of publicly available microarray data to address biological questions ranging from across-tissue differential expression to homologous ...
Matthew N. McCall, Karan Uppal, Harris A. Jaffee, ...
BMCBI
2008
85views more  BMCBI 2008»
15 years 4 months ago
Merging microarray data from separate breast cancer studies provides a robust prognostic test
Background: There is an urgent need for new prognostic markers of breast cancer metastases to ensure that newly diagnosed patients receive appropriate therapy. Recent studies have...
Lei Xu, Aik Choon Tan, Raimond L. Winslow, Donald ...
JMLR
2010
105views more  JMLR 2010»
14 years 11 months ago
Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data
In this study, we combined the ChIP-seq and the transcriptome data and integrated these data into signaling cascades. Integration was realized through a framework based on data- a...
Zerrin Isik, Volkan Atalay, Rengül Çet...
BMCBI
2004
149views more  BMCBI 2004»
15 years 4 months ago
MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states
Background: Information obtained by DNA microarray technology gives a rough snapshot of the transcriptome state, i.e., the expression level of all the genes expressed in a cell po...
Gaëlle Lelandais, Philippe Marc, Pierre Vince...
CSDA
2006
100views more  CSDA 2006»
15 years 4 months ago
Identification of interaction patterns and classification with applications to microarray data
Emerging patterns represent a class of interaction structures which has been recently proposed as a tool in data mining. In this paper, a new and more general definition refering ...
Anne-Laure Boulesteix, Gerhard Tutz