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ANOR
2010
112views more  ANOR 2010»
15 years 4 months ago
The Multi-Story Space Assignment Problem
-- The Multi-Story Space Assignment Problem (MSAP) is an innovative formulation of the multi-story facility assignment problem that allows one to model the location of departments ...
Peter M. Hahn, J. MacGregor Smith, Yi-Rong Zhu
BMCBI
2010
103views more  BMCBI 2010»
15 years 4 months ago
Detecting internally symmetric protein structures
Background: Many functional proteins have a symmetric structure. Most of these are multimeric complexes, which are made of non-symmetric monomers arranged in a symmetric manner. H...
Changhoon Kim, Jodi Basner, Byungkook Lee
135
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BMCBI
2008
117views more  BMCBI 2008»
15 years 4 months ago
RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
Background: With the rapid emergence of RNA databases and newly identified non-coding RNAs, an efficient compression algorithm for RNA sequence and structural information is neede...
Qi Liu, Yu Yang, Chun Chen, Jiajun Bu, Yin Zhang, ...
BMCBI
2008
140views more  BMCBI 2008»
15 years 4 months ago
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
Kazutaka Katoh, Hiroyuki Toh
BMCBI
2008
153views more  BMCBI 2008»
15 years 4 months ago
Estimating the size of the solution space of metabolic networks
Background: Cellular metabolism is one of the most investigated system of biological interactions. While the topological nature of individual reactions and pathways in the network...
Alfredo Braunstein, Roberto Mulet, Andrea Pagnani