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» Classifying biological articles using web resources
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BMCBI
2004
190views more  BMCBI 2004»
14 years 9 months ago
RAG: RNA-As-Graphs web resource
Background: The proliferation of structural and functional studies of RNA has revealed an increasing range of RNA's structural repertoire. Toward the objective of systematic ...
Daniela Fera, Namhee Kim, Nahum Shiffeldrim, Julie...
GECCO
2005
Springer
162views Optimization» more  GECCO 2005»
15 years 3 months ago
Discovering biological motifs with genetic programming
Choosing the right representation for a problem is important. In this article we introduce a linear genetic programming approach for motif discovery in protein families, and we al...
Rolv Seehuus, Amund Tveit, Ole Edsberg
BMCBI
2005
159views more  BMCBI 2005»
14 years 9 months ago
Columba: an integrated database of proteins, structures, and annotations
Background: Structural and functional research often requires the computation of sets of protein structures based on certain properties of the proteins, such as sequence features,...
Silke Trißl, Kristian Rother, Heiko Mül...
BMCBI
2008
108views more  BMCBI 2008»
14 years 9 months ago
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance
Background: Motif finding algorithms have developed in their ability to use computationally efficient methods to detect patterns in biological sequences. However the posterior cla...
Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arl...
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WONTO
2008
14 years 11 months ago
SCOP: a Java Framework for Building Semantic Virtual Communities in the Web
This paper describes the development of a framework to build Virtual Communities of Practice in the web. It is part of a larger project named as DWeb (acronym for Dream Web). The p...
Marcio Balian, Cedric Luiz de Carvalho