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» Cloud computing for comparative genomics
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CLOUDCOM
2010
Springer
14 years 10 months ago
Bag-of-Tasks Scheduling under Budget Constraints
Commercial cloud offerings, such as Amazon's EC2, let users allocate compute resources on demand, charging based on reserved time intervals. While this gives great flexibilit...
Ana-Maria Oprescu, Thilo Kielmann
104
Voted
SC
2009
ACM
15 years 7 months ago
Lessons learned from a year's worth of benchmarks of large data clouds
In this paper, we discuss some of the lessons that we have learned working with the Hadoop and Sector/Sphere systems. Both of these systems are cloud-based systems designed to sup...
Yunhong Gu, Robert L. Grossman
104
Voted
IPPS
2009
IEEE
15 years 7 months ago
Implementing protein seed-based comparison algorithm on the SGI RASC-100 platform
This paper describes a parallel FPGA implementation of a genomic sequence comparison algorithm for finding similarities between a large set of protein sequences and full genomes....
Van Hoa Nguyen, Alexandre Cornu, Dominique Lavenie...
101
Voted
BMCBI
2007
116views more  BMCBI 2007»
15 years 23 days ago
MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes
Background: Despite a remarkable success in the computational prediction of genes in Bacteria and Archaea, a lack of comprehensive understanding of prokaryotic gene structures pre...
Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang, ...
98
Voted
BMCBI
2010
126views more  BMCBI 2010»
15 years 26 days ago
Cgaln: fast and space-efficient whole-genome alignment
Background: Whole-genome sequence alignment is an essential process for extracting valuable information about the functions, evolution, and peculiarities of genomes under investig...
Ryuichiro Nakato, Osamu Gotoh