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» Clustering Genes Using Heterogeneous Data Sources
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BMCBI
2005
130views more  BMCBI 2005»
15 years 3 months ago
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...
BMCBI
2008
148views more  BMCBI 2008»
15 years 3 months ago
Automating dChip: toward reproducible sharing of microarray data analysis
Background: During the past decade, many software packages have been developed for analysis and visualization of various types of microarrays. We have developed and maintained the...
Cheng Li
VLDB
2000
ACM
146views Database» more  VLDB 2000»
15 years 6 months ago
A Database Platform for Bioinformatics
In recent years, new developments in genetics have generated a lot of interest in genomic and proteomic data, investing international significance (and competition) in the fledgli...
Sandeepan Banerjee
IPPS
2009
IEEE
15 years 10 months ago
Ibis: Real-world problem solving using real-world grids
Ibis is an open source software framework that drastically simplifies the process of programming and deploying large-scale parallel and distributed grid applications. Ibis suppor...
Henri E. Bal, Niels Drost, Roelof Kemp, Jason Maas...
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CGF
2008
142views more  CGF 2008»
15 years 3 months ago
Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context
DNA microarrays are used to measure the expression levels of thousands of genes simultaneously. In a time series experiment, the gene expressions are measured as a function of tim...
Michel A. Westenberg, Sacha A. F. T. van Hijum, Os...