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» Clustering Genes Using Heterogeneous Data Sources
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IDEAS
1997
IEEE
237views Database» more  IDEAS 1997»
15 years 7 months ago
Sequence Comparison Using a Relational Database Approach
A variety of heterogenous data sources is available in the field of molecular biology. Our focus lies on the biological sequence data, i. e. data maintained in collections like EM...
André Bergholz, Stephan Heymann, Jörg ...
BMCBI
2004
115views more  BMCBI 2004»
15 years 2 months ago
Quantifying the relationship between co-expression, co-regulation and gene function
Background: It is thought that genes with similar patterns of mRNA expression and genes with similar functions are likely to be regulated via the same mechanisms. It has been diff...
Dominic J. Allocco, Isaac S. Kohane, Atul J. Butte
GFKL
2004
Springer
137views Data Mining» more  GFKL 2004»
15 years 8 months ago
Density Estimation and Visualization for Data Containing Clusters of Unknown Structure
Abstract. A method for measuring the density of data sets that contain an unknown number of clusters of unknown sizes is proposed. This method, called Pareto Density Estimation (PD...
Alfred Ultsch
CPM
2005
Springer
109views Combinatorics» more  CPM 2005»
15 years 8 months ago
Using PQ Trees for Comparative Genomics
Permutations on strings representing gene clusters on genomes have been studied earlier in [18, 14, 3, 12, 17] and the idea of a maximal permutation pattern was introduced in [12]....
Gad M. Landau, Laxmi Parida, Oren Weimann
SIGOPS
2008
119views more  SIGOPS 2008»
15 years 2 months ago
Project Kittyhawk: building a global-scale computer: Blue Gene/P as a generic computing platform
This paper describes Project Kittyhawk, an undertaking at IBM Research to explore the construction of a nextgeneration platform capable of hosting many simultaneous web-scale work...
Jonathan Appavoo, Volkmar Uhlig, Amos Waterland