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» Clustering from Constraint Graphs
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PPOPP
2010
ACM
15 years 9 months ago
A distributed placement service for graph-structured and tree-structured data
Effective data placement strategies can enhance the performance of data-intensive applications implemented on high end computing clusters. Such strategies can have a significant i...
Gregory Buehrer, Srinivasan Parthasarathy, Shirish...
113
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BMCBI
2005
120views more  BMCBI 2005»
14 years 11 months ago
SpectralNET - an application for spectral graph analysis and visualization
Background: Graph theory provides a computational framework for modeling a variety of datasets including those emerging from genomics, proteomics, and chemical genetics. Networks ...
Joshua J. Forman, Paul A. Clemons, Stuart L. Schre...
SIAMDM
2010
140views more  SIAMDM 2010»
14 years 10 months ago
Retractions to Pseudoforests
For a fixed graph H, let Ret(H) denote the problem of deciding whether a given input graph is retractable to H. We classify the complexity of Ret(H) when H is a graph (with loops ...
Tomás Feder, Pavol Hell, Peter Jonsson, And...
BMCBI
2007
160views more  BMCBI 2007»
15 years 1 hour ago
Identifying protein complexes directly from high-throughput TAP data with Markov random fields
Background: Predicting protein complexes from experimental data remains a challenge due to limited resolution and stochastic errors of high-throughput methods. Current algorithms ...
Wasinee Rungsarityotin, Roland Krause, Arno Sch&ou...
ACAL
2007
Springer
15 years 6 months ago
An Integrated QAP-Based Approach to Visualize Patterns of Gene Expression Similarity
Abstract. This paper illustrates how the Quadratic Assignment Problem (QAP) is used as a mathematical model that helps to produce a visualization of microarray data, based on the r...
Mario Inostroza-Ponta, Alexandre Mendes, Regina Be...