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» Clustering functional data with the SOM algorithm
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RECOMB
2006
Springer
16 years 4 months ago
Identification and Evaluation of Functional Modules in Gene Co-expression Networks
Abstract. Identifying gene functional modules is an important step towards elucidating gene functions at a global scale. In this paper, we introduce a simple method to construct ge...
Jianhua Ruan, Weixiong Zhang
BMCBI
2008
124views more  BMCBI 2008»
15 years 4 months ago
Inferring modules of functionally interacting proteins using the Bond Energy Algorithm
Background: Non-homology based methods such as phylogenetic profiles are effective for predicting functional relationships between proteins with no considerable sequence or struct...
Ryosuke Watanabe, Enrique Morett, Edgar E. Vallejo
NAR
2011
225views Computer Vision» more  NAR 2011»
14 years 6 months ago
IsoBase: a database of functionally related proteins across PPI networks
We describe IsoBase, a database identifying functionally related proteins, across five major eukaryotic model organisms: Saccharomyces cerevisiae, Drosophila melanogaster, Caenorh...
Daniel Park, Rohit Singh, Michael Baym, Chung-Shou...
135
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DAWAK
2007
Springer
15 years 10 months ago
MOSAIC: A Proximity Graph Approach for Agglomerative Clustering
Representative-based clustering algorithms are quite popular due to their relative high speed and because of their sound theoretical foundation. On the other hand, the clusters the...
Jiyeon Choo, Rachsuda Jiamthapthaksin, Chun-Sheng ...
AUSAI
2005
Springer
15 years 9 months ago
Finding Similar Patterns in Microarray Data
Abstract. In this paper we propose a clustering algorithm called sCluster for analysis of gene expression data based on pattern-similarity. The algorithm captures the tight cluster...
Xiangsheng Chen, Jiuyong Li, Grant Daggard, Xiaodi...