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» Clustering gene expression patterns
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BMCBI
2006
131views more  BMCBI 2006»
14 years 10 months ago
Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
Background: Microarrays measure the binding of nucleotide sequences to a set of sequence specific probes. This information is combined with annotation specifying the relationship ...
Michal J. Okoniewski, Crispin J. Miller
SDM
2009
SIAM
130views Data Mining» more  SDM 2009»
15 years 7 months ago
FuncICA for Time Series Pattern Discovery.
We introduce FuncICA, a new independent component analysis method for pattern discovery in inherently functional data, such as time series data. FuncICA can be considered an analo...
Alexander Gray, Nishant Mehta
DILS
2006
Springer
15 years 1 months ago
On Querying OBO Ontologies Using a DAG Pattern Query Language
The Open Biomedical Ontologies (OBO) is a consortium that serves as a repository of ontologies that are structured like directed acyclic graphs. In this paper we present a language...
Amarnath Gupta, Simone Santini
ECAL
2005
Springer
15 years 3 months ago
Biological Development of Cell Patterns: Characterizing the Space of Cell Chemistry Genetic Regulatory Networks
Abstract. Genetic regulatory networks (GRNs) control gene expression and are responsible for establishing the regular cellular patterns that constitute an organism. This paper intr...
Nicholas S. Flann, Jing Hu, Mayank Bansal, Vinay P...
JCB
2008
90views more  JCB 2008»
14 years 10 months ago
A Simple Model of the Modular Structure of Transcriptional Regulation in Yeast
Resolving the general organizational principles that govern the interactions during transcriptional gene regulation has great relevance for understanding disease progression, biof...
Vladimir Filkov, Nameeta Shah