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» Clustering gene expression patterns
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BMCBI
2007
120views more  BMCBI 2007»
14 years 10 months ago
Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays
Background: Extracting biological information from high-density Affymetrix arrays is a multi-step process that begins with the accurate annotation of microarray probes. Shortfalls...
Jun Lu, Joseph C. Lee, Marc L. Salit, Margaret C. ...
JCB
2006
129views more  JCB 2006»
14 years 10 months ago
GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data
Genome-wide microarray designs containing millions to hundreds of millions of probes are available for a variety of mammals, including mouse and human. These genome tiling arrays ...
Brendan J. Frey, Quaid Morris, Timothy R. Hughes
GECCO
2005
Springer
186views Optimization» more  GECCO 2005»
15 years 3 months ago
Subproblem optimization by gene correlation with singular value decomposition
Several ways of using singular value decomposition (SVD), a linear algebra technique typically used for information retrieval, to decompose problems into subproblems are investiga...
Jacob G. Martin
BMCBI
2004
156views more  BMCBI 2004»
14 years 10 months ago
GeneXplorer: an interactive web application for microarray data visualization and analysis
Background: When publishing large-scale microarray datasets, it is of great value to create supplemental websites where either the full data, or selected subsets corresponding to ...
Christian A. Rees, Janos Demeter, John C. Matese, ...
RECOMB
2008
Springer
15 years 10 months ago
Accounting for Non-genetic Factors Improves the Power of eQTL Studies
Abstract. The recent availability of large scale data sets profiling single nucleotide polymorphisms (SNPs) and gene expression across different human populations, has directed muc...
Oliver Stegle, Anitha Kannan, Richard Durbin, John...