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BIOINFORMATICS
2005
93views more  BIOINFORMATICS 2005»
14 years 9 months ago
Donuts, scratches and blanks: robust model-based segmentation of microarray images
Inner holes, artifacts and blank spots are common in microarray images, but current image analysis methods do not pay them enough attention. We propose a new robust model-based me...
Qunhua Li, Chris Fraley, Roger Eugene Bumgarner, K...
BMCBI
2010
202views more  BMCBI 2010»
14 years 9 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader
BMCBI
2006
143views more  BMCBI 2006»
14 years 9 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
SDM
2010
SIAM
259views Data Mining» more  SDM 2010»
14 years 11 months ago
Semi-supervised Bio-named Entity Recognition with Word-Codebook Learning
We describe a novel semi-supervised method called WordCodebook Learning (WCL), and apply it to the task of bionamed entity recognition (bioNER). Typical bioNER systems can be seen...
Pavel P. Kuksa, Yanjun Qi
BMCBI
2006
113views more  BMCBI 2006»
14 years 9 months ago
In silico discovery of human natural antisense transcripts
Background: Several high-throughput searches for ppotential natural antisense transcripts (NATs) have been performed recently, but most of the reports were focused on cis type. A ...
Yuan-Yuan Li, Lei Qin, Zong-Ming Guo, Lei Liu, Hao...