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» Clustering gene expression patterns
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APBC
2008
231views Bioinformatics» more  APBC 2008»
14 years 11 months ago
Optimal Algorithm for Finding DNA Motifs with Nucleotide Adjacent Dependency
: Finding motifs and the corresponding binding sites is a critical and challenging problem in studying the process of gene expression. String and matrix representations are two pop...
Francis Y. L. Chin, Henry C. M. Leung, Man-Hung Si...
BMCBI
2005
93views more  BMCBI 2005»
14 years 9 months ago
Two-part permutation tests for DNA methylation and microarray data
Background: One important application of microarray experiments is to identify differentially expressed genes. Often, small and negative expression levels were clipped-off to be e...
Markus Neuhäuser, Tanja Boes, Karl-Heinz J&ou...
93
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BMCBI
2005
94views more  BMCBI 2005»
14 years 9 months ago
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities
Background: A number of algorithms for steady state analysis of metabolic networks have been developed over the years. Of these, Elementary Mode Analysis (EMA) has proven especial...
Roland Schwarz, Patrick Musch, Axel von Kamp, Bern...
BMCBI
2006
110views more  BMCBI 2006»
14 years 9 months ago
CpGcluster: a distance-based algorithm for CpG-island detection
Background: Despite their involvement in the regulation of gene expression and their importance as genomic markers for promoter prediction, no objective standard exists for defini...
Michael Hackenberg, Christopher Previti, Pedro Lui...
MIR
2005
ACM
197views Multimedia» more  MIR 2005»
15 years 3 months ago
Enhanced ontologies for video annotation and retrieval
A typical way to perform video annotation requires to classify video elements (e.g. events and objects) according to some pre-defined ontology of the video content domain. Ontolo...
Marco Bertini, Alberto Del Bimbo, Carlo Torniai