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» Clustering gene expression patterns
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BMCBI
2005
142views more  BMCBI 2005»
14 years 9 months ago
CLU: A new algorithm for EST clustering
Background: The continuous flow of EST data remains one of the richest sources for discoveries in modern biology. The first step in EST data mining is usually associated with EST ...
Andrey A. Ptitsyn, Winston Hide
ISBRA
2007
Springer
15 years 4 months ago
Discovering Relations Among GO-Annotated Clusters by Graph Kernel Methods
The biological interpretation of large-scale gene expression data is one of the challenges in current bioinformatics. The state-of-theart approach is to perform clustering and then...
Italo Zoppis, Daniele Merico, Marco Antoniotti, Bu...
KDD
2003
ACM
145views Data Mining» more  KDD 2003»
15 years 10 months ago
Carpenter: finding closed patterns in long biological datasets
The growth of bioinformatics has resulted in datasets with new characteristics. These datasets typically contain a large number of columns and a small number of rows. For example,...
Feng Pan, Gao Cong, Anthony K. H. Tung, Jiong Yang...
BIBE
2007
IEEE
151views Bioinformatics» more  BIBE 2007»
14 years 11 months ago
On the Effectiveness of Constraints Sets in Clustering Genes
—In this paper, we have modified a constrained clustering algorithm to perform exploratory analysis on gene expression data using prior knowledge presented in the form of constr...
Erliang Zeng, Chengyong Yang, Tao Li, Giri Narasim...
RECOMB
2010
Springer
15 years 4 months ago
Hierarchical Generative Biclustering for MicroRNA Expression Analysis
Clustering methods are a useful and common first step in gene expression studies, but the results may be hard to interpret. We bring in explicitly an indicator of which genes tie ...
José Caldas, Samuel Kaski