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CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
15 years 7 months ago
Discriminative Discovery of Transcription Factor Binding Sites from Location Data
Motivation: The availability of genome-wide location analyses based on chromatin immunoprecipitation (ChIP) data gives a new insight for in silico analysis of transcriptional regu...
Yuji Kawada, Yasubumi Sakakibara
BMCBI
2010
99views more  BMCBI 2010»
15 years 2 months ago
Different effects of the probe summarization algorithms PLIER and RMA on high-level analysis of Affymetrix exon arrays
Background: Alternative splicing is an important mechanism that increases protein diversity and functionality in higher eukaryotes. Affymetrix exon arrays are a commercialized pla...
Yi Qu, Fei He, Yuchen Chen
BMCBI
2004
106views more  BMCBI 2004»
15 years 1 months ago
Spotting effect in microarray experiments
Background: Microarray data must be normalized because they suffer from multiple biases. We have identified a source of spatial experimental variability that significantly affects...
Tristan Mary-Huard, Jean-Jacques Daudin, Sté...
BIBM
2008
IEEE
125views Bioinformatics» more  BIBM 2008»
15 years 2 months ago
Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic
This paper addresses the protein classification problem, and explores how its accuracy can be improved by using information from time-course gene expression data. The methods are ...
Antonina Mitrofanova, Samantha Kleinberg, Jane Car...
JIKM
2006
136views more  JIKM 2006»
15 years 1 months ago
Decision Support Systems Using Ensemble Genetic Programming
Abstract. This paper proposes a decision support system for tactical air combat environment using a combination of unsupervised learning for clustering the data and an ensemble of ...
Ajith Abraham, Crina Grosan