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CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Discriminative Discovery of Transcription Factor Binding Sites from Location Data
Motivation: The availability of genome-wide location analyses based on chromatin immunoprecipitation (ChIP) data gives a new insight for in silico analysis of transcriptional regu...
Yuji Kawada, Yasubumi Sakakibara
BMCBI
2010
99views more  BMCBI 2010»
14 years 10 months ago
Different effects of the probe summarization algorithms PLIER and RMA on high-level analysis of Affymetrix exon arrays
Background: Alternative splicing is an important mechanism that increases protein diversity and functionality in higher eukaryotes. Affymetrix exon arrays are a commercialized pla...
Yi Qu, Fei He, Yuchen Chen
BMCBI
2004
106views more  BMCBI 2004»
14 years 9 months ago
Spotting effect in microarray experiments
Background: Microarray data must be normalized because they suffer from multiple biases. We have identified a source of spatial experimental variability that significantly affects...
Tristan Mary-Huard, Jean-Jacques Daudin, Sté...
BIBM
2008
IEEE
125views Bioinformatics» more  BIBM 2008»
14 years 10 months ago
Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic
This paper addresses the protein classification problem, and explores how its accuracy can be improved by using information from time-course gene expression data. The methods are ...
Antonina Mitrofanova, Samantha Kleinberg, Jane Car...
JIKM
2006
136views more  JIKM 2006»
14 years 9 months ago
Decision Support Systems Using Ensemble Genetic Programming
Abstract. This paper proposes a decision support system for tactical air combat environment using a combination of unsupervised learning for clustering the data and an ensemble of ...
Ajith Abraham, Crina Grosan