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IJON
2006
95views more  IJON 2006»
14 years 9 months ago
Generalized relevance LVQ (GRLVQ) with correlation measures for gene expression analysis
A correlation-based similarity measure is derived for generalized relevance learning vector quantization (GRLVQ). The resulting GRLVQ-C classifier makes Pearson correlation availa...
Marc Strickert, Udo Seiffert, Nese Sreenivasulu, W...
CIBB
2008
14 years 11 months ago
Unsupervised Stability-Based Ensembles to Discover Reliable Structures in Complex Bio-molecular Data
The assessment of the reliability of clusters discovered in bio-molecular data is a central issue in several bioinformatics problems. Several methods based on the concept of stabil...
Alberto Bertoni, Giorgio Valentini
BMCBI
2008
144views more  BMCBI 2008»
14 years 9 months ago
WGCNA: an R package for weighted correlation network analysis
Background: Correlation networks are increasingly being used in bioinformatics applications. For example, weighted gene co-expression network analysis is a systems biology method ...
Peter Langfelder, Steve Horvath
BMCBI
2004
206views more  BMCBI 2004»
14 years 9 months ago
Combining gene expression data from different generations of oligonucleotide arrays
Background: One of the important challenges in microarray analysis is to take full advantage of previously accumulated data, both from one's own laboratory and from public re...
Kyu Baek Hwang, Sek Won Kong, Steven A. Greenberg,...
BMCBI
2007
182views more  BMCBI 2007»
14 years 9 months ago
EDISA: extracting biclusters from multiple time-series of gene expression profiles
Background: Cells dynamically adapt their gene expression patterns in response to various stimuli. This response is orchestrated into a number of gene expression modules consistin...
Jochen Supper, Martin Strauch, Dierk Wanke, Klaus ...