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BMCBI
2007
265views more  BMCBI 2007»
14 years 12 months ago
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
Background: Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clu...
Tobias Wittkop, Jan Baumbach, Francisco P. Lobo, S...
ICTAI
2006
IEEE
15 years 5 months ago
Preserving Patterns in Bipartite Graph Partitioning
This paper describes a new bipartite formulation for word-document co-clustering such that hyperclique patterns, strongly affiliated documents in this case, are guaranteed not to ...
Tianming Hu, Chao Qu, Chew Lim Tan, Sam Yuan Sung,...
PAKDD
2007
ACM
224views Data Mining» more  PAKDD 2007»
15 years 6 months ago
Graph Nodes Clustering Based on the Commute-Time Kernel
This work presents a kernel method for clustering the nodes of a weighted, undirected, graph. The algorithm is based on a two-step procedure. First, the sigmoid commute-time kernel...
Luh Yen, François Fouss, Christine Decaeste...
PAKDD
2004
ACM
183views Data Mining» more  PAKDD 2004»
15 years 5 months ago
Constraint-Based Graph Clustering through Node Sequencing and Partitioning
This paper proposes a two-step graph partitioning method to discover constrained clusters with an objective function that follows the well-known minmax clustering principle. Compar...
Yu Qian, Kang Zhang, Wei Lai
WG
2010
Springer
14 years 10 months ago
Computing the Cutwidth of Bipartite Permutation Graphs in Linear Time
The problem of determining the cutwidth of a graph is a notoriously hard problem which remains NP-complete under severe restrictions on input graphs. Until recently, non-trivial p...
Pinar Heggernes, Pim van 't Hof, Daniel Lokshtanov...