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IPPS
2008
IEEE
15 years 10 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
CIKM
2008
Springer
15 years 6 months ago
A consensus based approach to constrained clustering of software requirements
Managing large-scale software projects involves a number of activities such as viewpoint extraction, feature detection, and requirements management, all of which require a human a...
Chuan Duan, Jane Cleland-Huang, Bamshad Mobasher
BMCBI
2005
73views more  BMCBI 2005»
15 years 3 months ago
Evaluation of Glycine max mRNA clusters
Background: Clustering the ESTs from a large dataset representing a single species is a convenient starting point for a number of investigations into gene discovery, genome evolut...
Ronald L. Frank, Fikret Erçal
DATE
2009
IEEE
113views Hardware» more  DATE 2009»
15 years 10 months ago
Algorithms for the automatic extension of an instruction-set
Abstract—In this paper, two general algorithms for the automatic generation of instruction-set extensions are presented. The basic instruction set of a reconfigurable architectu...
Carlo Galuzzi, Dimitris Theodoropoulos, Roel Meeuw...
BIOCOMP
2008
15 years 5 months ago
Prediction of Protein Function Using Graph Container and Message Passing
We introduce a novel parameter called container flux, which is used to measure the information sharing capacity between two distinct nodes in a graph. Other useful information, bot...
Hongbo Zhou, Qiang Shawn Cheng, Mehdi Zargham