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BMCBI
2007
180views more  BMCBI 2007»
14 years 11 months ago
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data
Background: The Affymetrix™ technology is nowadays a well-established method for the analysis of gene expression profiles in cancer research studies. However, changes in gene ex...
Davide Rambaldi, Barbara Felice, Viviane Praz, Phi...
TCBB
2008
107views more  TCBB 2008»
14 years 11 months ago
Coclustering of Human Cancer Microarrays Using Minimum Sum-Squared Residue Coclustering
It is a consensus in microarray analysis that identifying potential local patterns, characterized by coherent groups of genes and conditions, may shed light on the discovery of pre...
Hyuk Cho, Inderjit S. Dhillon
BMCBI
2011
14 years 6 months ago
Hierarchical graphs for rule-based modeling of biochemical systems
Background: In rule-based modeling, graphs are used to represent molecules: a colored vertex represents a component of a molecule, a vertex attribute represents the internal state...
Nathan W. Lemons, Bin Hu, William S. Hlavacek
NAR
2011
307views Computer Vision» more  NAR 2011»
14 years 6 months ago
BRENDA, the enzyme information system in 2011
The BRENDA (BRaunschweig ENzyme Database, http://www.brenda-enzymes.org) enzyme information system is the main collection of enzyme functional and property data for the scientific...
Maurice Scheer, Andreas Grote, Antje Chang, Ida Sc...
ACL
2011
14 years 3 months ago
Semi-supervised latent variable models for sentence-level sentiment analysis
We derive two variants of a semi-supervised model for fine-grained sentiment analysis. Both models leverage abundant natural supervision in the form of review ratings, as well as...
Oscar Täckström, Ryan T. McDonald